Getting started

Local installs and Web site

• make sure you are using the latest version of Google Chrome
• here is an etherpad link for copy/paste

Software we’ll be using on the server

• Trimmomatic
• FastQC
• khmer
• bowtie2
• a few custom scripts in the workshop repository

The Dockerfile shows the basic installation instructions for an Ubuntu machine.

A first test

Click here:

Once you’re at the console, go to New... Terminal... and copy/paste this text into it:

echo hello, world

If it doesn’t work, could you e-mail me with your browser and OS version, please?

If copy/paste doesn’t work for you, you can do the following:

• open a new file in the editor, and name it ‘commands.sh’;

• copy/paste stuff into commands.sh, clearing it each time;

• to execute the commands, run:

  . commands.sh
  

Next: Some background

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